Category Archives: Uncategorized

The secret of Russian programmers

From the very interesting Michael Lewis' Vanity Fair article on the Sergey Aleynikov's case:

"“In Russia, time on the computer was measured in minutes,” he [Aleynikov] says. “When you write a program, you are given a tiny time slot to make it work. Consequently we learned to write the code in a way that minimized the amount of debugging. And so you had to think about it a lot before you committed it to paper. . . . The ready availability of computer time creates this mode of working where you just have an idea and type it and maybe erase it 10 times. Good Russian programmers, they tend to have had that one experience at some time in the past: the experience of limited access to computer time.

Successful development of skills through constraints, it seems to work pretty well across the board.

Vaclav Smil and polymathy

Vaclav Smil is an influential thinker who's seen a spike in popularity after Bill Gates put a couple of Smil's books in his summer reading list. Gates also wrote a very positive review of Smil's Energy Myths and Realities: Bringing Science to the Energy Policy Debate. Gates also wrote in a review of Harvesting the Biosphere, one of Smil’s latest books: “The word “polymath” was invented to describe people like him.”

I read some of Smil's books, and I have every intention of continuing to do so. Smil was recently interviewed by Ritchie King on Quartz. A few snippets:

"His book count will hit 34 in December, and he’s published hundreds of academic papers".

"I’m the product of the classical, old-fashioned European education that is broad-based".

"I’ve read about 80 books a year for the past 50 years. I come from cultural breeding. I don’t have a cellphone. When you spend all your time checking your cellphone messages, or updating your Facebook (of course I don’t have a Facebook page) then you don’t have any time for reading."

- Note: so, given 52 weeks a year, this comes down to ~1.5 books a week. Assuming quite liberally that he reads 2 hrs a day every day and that 1.5 books correspond to 400-600 pages, it boils down to one page each 90-120 seconds. Not exceptional, mind you, the exceptional part is being so consistent (1/12 of each day spent reading sum up over 50 years to more than 4 years of reading for 4000 books).

"If you ask “what has been the most important invention of the past 100, 150 years?” it’s been the synthesis of ammonia. If we could not synthesize ammonia by taking nitrogen from the air, hydrogen from natural gas and pressing them together in the Haber-Bosch cycle… if we could not do this to make nitrogen fertilizers, we could not grow enough food for about 40% of people. So you are talking about something like three billion people. In existential terms, that is the most important invention."

Very true, read also Smil's book on the effects of the invention of the Haber-Bosch cycle.

IOF Marie Curie Fellowship – from applying to winning (Part 1)

At the end of 2001 I received an awesome email message stating that my final score for my 2011 IOF MC Fellowship proposal was 93 and changes (here is the evaluation sheet). After a brief and sweat-inducing google search, I was confident I was getting financed (threshold was around 91).

When I was preparing my MC proposal I was desperately looking for some success stories, guidelines, whatever, and there were none (except at this awesome cyberplace). I think it is good to share the various steps that led me to win the MC Fellowships.

tl;dr I had a good project in mind, I decided to apply (3 weeks for writing), I won.

Long story

Approximately one year before applying for the 2011 MC round, I applied for the Italian FIRB grant, which at the time was reserved to young Italian scientists at various stages of their careers. I prepared the FIRB proposal with my colleagues Daniele Bevacqua and Marti Pujolar (click here for the proposal, half in Italian and half in English). Although FIRB money was assigned to a single researcher and not to a group, the plan was to get Daniele and Marti onboard with a couple of post doc scholarships.

In 2011 I was short listed for the FIRB and I had to fly from Santa Cruz (I was working with Marc Mangel and MRAG at the time) to Rome to present my project to 3 Italian scientists at the Italian Ministry for Research. The format was 12 minutes for the presentation plus 5 minutes for questions (all in English, talk is here). Meanwhile, I received an email from some scientific society informing that the deadline for submitting a Marie Curie proposal was 3 weeks away. After brief and intense thinking, I decided to apply for the MC International Marie Curie Fellowship with the plan of spending to years at the University of California Santa Cruz and one year (re-integration period) at the Polytechnic of Milan. I was confident I had a good project in mind (very similar to the one I submitted for the Italian FIRB), and 3 weeks seemed enough time to prepare the 30-page proposal (well..). I pitched my project to Marc Mangel and Carlos Garza at UCSC (my international supervisors, Marc was faculty at the Department of Applied Math and Statistics, Carlos an adjunct faculty at Ocean Sciences) and to Marino Gatto (the “scientist in charge” of the project) at the Polytechnic of Milan. They accepted to be my supervisors and I started writing furiously, although I wouldn’t say lucidly. This time I prepared the whole proposal myself (with agonizing hours spent preparing the whole ‘why the institutions are appropriate’), while Marc, Carlos and Marino provided very valuable feedback. I was able to submit the proposal a couple of days before the deadline and made a promise to myself I would never prepare later proposals in less than a couple of months, you know how it goes.

In September I received the results for the FIRB. Unfortunately, I did not get the grant for just one point over 70 total points. The justification was that while my project was great and my presentation in Rome had been fantastic, I forgot to present some aspects of the budget. Of course they were wrong, since I presented (during a 12-minute science talk!!!!) in detail the whole budget (see here). Anyway, if you want to get frustrated, just try to present your case to some bureaucrats, yes, sure. Especially Italian bureaucrats. They are half laughing at you, seriously, no collaboration whatsoever. More angry than disappointed, I almost forgot about my proposal when I received the email with my score for the MC. Well done. Also, the MC IOF is way better than the FIRB Fellowship. Well done again.

What it takes to win an ERC starting research grant

According to the ERC (European Research Council) webpage, ERC Starting and Consolidator Grants (from now on just ERC grants) “aim to support up-and-coming research leaders who are about to establish a proper research team and to start conducting independent research in Europe”. In brief, candidates for ERC grants are researchers of any nationality with 2-7 (Starting) and 7-14 (Consolidator) years of experience since completion of PhD. A project must be submitted. Research must be conducted in a public or private research organization located in one of the EU Member State or Associated Countries. The funding is up to € 1.5 (Starting) to 2 (Consolidator) million, and the duration is up to 5 years. The sole criterion for assigning a ERC grants is excellence, considering both publication record and the proposed project. According to official stats, the overall success rate for ERC grants in 2013 was 9%.

Up to 2011, the most successful institutions (combining starting and consolidator grants) were CNRS (France), University of Cambridge (UK), University of Oxford (UK), Max Planck Society (Germany), EPFL (Lusanne, Switzerland), Hebrew University of Jerusalem (Israel), ETH (Zurich, Switzerland), Imperial College (London, UK), University College London (UK), Weizmann Institute (Israel).

For Marie Curie Fellowships  (data is for year 2012), success rate was 19.19% for Intra-European Fellowships, and 20.09% for International Outgoing Fellowships (I have one of those). So, there is a substantial drop in success rate (as expected) going from MC Fellowships to ERC grants .

There are 3 domains for ERC grants: Life Sciences, Physical Sciences & Engineering, and Social Sciences & Humanities.

The Life Sciences domain is divided in 9 more specific categories:

  • LS1 Molecular & Structural Biology & Biochemistry
  • LS2 Genetics, Genomics, Bioinformatics & System Biology
  • LS3 Cellular and Developmental Biology
  • LS4 Physiology, Pathophysiology & Endocrinology
  • LS5 Neurosciences & Neural Disorders
  • LS6 Immunity & Infection
  • LS7 Diagnostic Tools, Therapies & Public Health
  • LS8 Evolutionary, Population & Environmental Biology
  • LS9 Applied Life Sciences & Non-Medical Biotechnology

I will focus on sub-domain LS8 Evolutionary, Population & Environmental Biology since it is the one closer to my research interests and activities.

For the 2013 round, there were 9 winning researchers of ERC Starting grants (I could not find info for the Consolidator grants, it might be they are not out yet) whose projects fell into the LS8 subdomain, 4 are women and 5 are men. I was able to check CV/publications of all of them.

In particular, I checked where they published their first-author publications (nobody knows the contribution of the third author in a 7-author publication in Science. Did she/he provided some kind of feedback? Contributed to the idea? Helped with analysis, programming, statistics etc.? Provided moral support? Who knows). I just recorded the best journals in which they published as first-authors. "Best journals" was defined just in terms of reputation/historical ranking of the journal, without any formal threshold. I won’t name names (all bullets below are anonymous), but you can google yourself if you are so inclined. Here we go, each bullet point is for a single researcher:

  • Journal of Theoretical Biology,  PNAS (multiple times), Philosophical Transactions of the Royal Society  B, Genetics.
  • Trends in Genetics, Molecular Ecology (multiple times), BMC Evolutionary Ecology, Proceedings of the Royal Society B.
  • Science, Functional Ecology, American Naturalist, PNAS, Conservation Biology.
  • Proceedings of the Royal Society B (multiple times), Evolution (multiple times), PNAS, Journal of Evolutionary Biology.
  • PNAS, Nature Geoscience, Science, Geology.
  • PNAS, Science, Molecular Biology and Evolution, Trends in Genetics.
  • Nature, Science, Ecological Applications, American Naturalists, Ecology, Journal of Animal Ecology.
  • Science, PNAS, Ecology Letters, Functional Ecology, Annual Review in Ecology and Systematics, Nature.
  • Science, Trends in Ecology and Evolution, Proceedings of the Royal Society B (multiple times), American Naturalist, Molecular Ecology, Evolution.

So, 8 out 9 winners published in a top multidisciplinary journal (Science, Nature, PNAS), some of them multiple times, some of them also as coauthors (it is possible that the researcher who did not come up with a publication in Science, Nature, PNAS actually published there, but I did not get it). All of them published in top journals either in the "Ecology" or "Evolutionary Biology" category (some of them in both).

All of them are specialized researchers, they work on one (or some very closely related) problem(s) (with exceptional results, see above), but without much diversification (no formal threshold also in this case, I just read the publication titles/research interests).

It seems that publishing in a top multidisciplinary journal is a (almost) necessary (although likely not sufficient, other researcher may have published in top multidisciplinary journals, but did not win) condition to win an ERC grant, isn’t it?

Something to keep in mind in the case you want to apply for an ERC grant (clearly stated also here "[...] including significant publications (as main author) in major international peer-reviewed multidisciplinary scientific journals, or in the leading international peer-reviewed journals of their respective field").